PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929405.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 1122aa    MW: 124817 Da    PI: 6.9696
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929405.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.68.6e-22128228198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  XP_010929405.1 128 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDE 218
                     99*****************************954.4444.49************************************************..557 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     +++l+++++ 
  XP_010929405.1 219 KQQLLLGIRH 228
                     8888999886 PP

2Auxin_resp121.27.8e-40254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m+feteds +rr++Gt++g+ dldp+rW+nS+Wr+L+
  XP_010929405.1 254 AAHAAANNSPFTVFYNPRASPSEFVIPFAKYQKAVYsNQISLGMRFRMMFETEDSGTRRYMGTITGIGDLDPMRWKNSPWRNLQ 337
                     79*********************************989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-43118257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-40121243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-18127219No hitNo description
PROSITE profilePS5086311.42128230IPR003340B3 DNA binding domain
PfamPF023627.3E-20128229IPR003340B3 DNA binding domain
SMARTSM010193.8E-21128230IPR003340B3 DNA binding domain
PfamPF065074.1E-35254337IPR010525Auxin response factor
PfamPF023091.1E-89871074IPR033389AUX/IAA domain
PROSITE profilePS5174528.1219891073IPR000270PB1 domain
SuperFamilySSF542774.81E-710021067No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1122 aa     Download sequence    Send to blast
MKGPVNAAAA ANPSEGERKT INPELWYACA GPLVTLPPVG SLVVYFPQGH SEQVAASMQK  60
DIDAHIPSYP NLPSKLICLL HNVTLHADPE TDEVYAQMTL QPVNTYDKEA LQASELALKQ  120
TRPQTDFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS MQPPAQELQA RDLHDNVWTF  180
RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFIRDEKQ QLLLGIRHAN RQPTNISSSV  240
LSSDSMHIGI LAAAAHAAAN NSPFTVFYNP RASPSEFVIP FAKYQKAVYS NQISLGMRFR  300
MMFETEDSGT RRYMGTITGI GDLDPMRWKN SPWRNLQVGW DESAAGERRT RVSIWEIEPV  360
AAPFFICPAP FFRPKRPKQP GMPDDESSEM ENIFKRAMPW LDEEICIKDS QTQNTVMPGL  420
SLVQWISMQQ NPSLANPTMQ TDYLRSLTGP SMQNLGATDL SRQLSMQAQF LQQNNTQFNS  480
RLPQQNQQLD QLSKVSVPLN QLGIVTRPPQ QMQDVQRQQL VNQSLPVNQT PTSLIQSQIL  540
VQAQVQQQQS VIQSHQPLQT NLQQNQPQHQ QLLLQQQQLL QEQLSHQQQN PLQQQLQQQQ  600
NRTSVQLPNH INKRLQLTDH QIQLQLLQKL QQQQPLSQPT VQHLQLPQIQ EQQKPLLKLP  660
HQLSNSHSLM QQNMIPQQCA KATSQAVWLP QSLLQQSQQK LQQQQVVPSE LNGAVLPPTP  720
KTGVLSTTGT SLLAAGGAQS GLTEDVPSCS TSPSMNNGAV LPLPMLNGTH HLSTITTDKT  780
SQSAVTILSH NSFEAVAASP NIAKELPKSV HNVKASTPIS KVQTQGVIAP QMYTSNAAQM  840
DYLDTTSSAT SVCLSQTDGP LPQSFLLSSF NQPSMLRDAP PSSEVQGTDP RNNVLFGVNI  900
DCPLGIPLTT DALLANSIDS GKYQNHVSGN VIANHSTSKD AQQELSSSLV SHSFGVPDMA  960
FNSIDSTINE SSFLHRSSWV PAPSLQRMRT YTKVYKRGAV GRSIDITRYS GYDELKHDLA  1020
RMFSIEGQLE DRQRIGWKLV YVDHENDVLL VGDDPWEEFV NCVRCIKILS PQEVQQMRLE  1080
GDLENNILPN QACSSSDGGN KWRGQCEQNS CNPSAGSYDR LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1681635845388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929405.10.0PREDICTED: auxin response factor 19-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLJ3L9I40.0J3L9I4_ORYBR; Auxin response factor
STRINGOB02G13010.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19